MmuEX0047476 @ mm9
Exon Skipping
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105102883-105108909:+
Coord C1 exon
chr11:105102883-105102975
Coord A exon
chr11:105108088-105108198
Coord C2 exon
chr11:105108773-105108909
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAAACCTTTTCCCATTGAAGGCC
3' ss Score
6.46
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TCTGACCTCACAATAGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTAGAGAAGAAGGAAGGAAGAATAGATGATTTATTAAGA
Seq A exon
GCCAACTGTGATTTGAGACGACAGATAGATGAACAGCAAAAGATGCTAGAGAAATACAAGGAACGATTAAATAGATGTGTCACCATGAGCAAGAAGCTCCTTATAGAAAAG
Seq C2 exon
TCAAAACAAGAGAAGATGGCGTGCAGAGATAAGAGCATGCAGGACCGATTGCGATTAGGCCACTTTACTACTGTCCGGCATGGAGCCTCGTTTACTGAGCAGTGGACAGATGGTTATGCTTTCCAAAACCTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.554 A=0.046 C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCACTAGAAAACAGTAAGAACT
R:
TGAGGTTTTGGAAAGCATAACCA
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: