GgaEX1058710 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2285729-2288816:+
Coord C1 exon
chr27:2285729-2285821
Coord A exon
chr27:2287194-2287304
Coord C2 exon
chr27:2288680-2288816
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTGTTCACTTTTAGGCC
3' ss Score
11.55
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCGGACCTCACAATGGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTGGAGAAGAAGGAAGGGAGGATAGATGACTTACTAAGA
Seq A exon
GCCAACTGTGATTTGAGACGGCAGATAGATGAACAACAAAAGATGCTGGAGAAGTACAAGGAGCGGTTGAATAGATGTGTAACGATGAGCAAGAAGCTCCTTATAGAAAAG
Seq C2 exon
TCAAAACAGGAGAAGATGGCGTGCAGAGATAAGAGCATGCAGGATCGATTGAGGCTAGGTCACTTCACTACGGTGCGGCATGGGGCGTCCTTCACCGAGCAGTGGACAGATGGCTATGCCTTCCAGAACCTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410-'13-18,'13-16,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.785 A=0.288 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACCTCACAATGGAAAAA
R:
TGAGGTTCTGGAAGGCATAGC
Band lengths:
226-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]