RnoEX0090881 @ rn6
Exon Skipping
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93465608-93471445:+
Coord C1 exon
chr10:93465608-93465700
Coord A exon
chr10:93470616-93470726
Coord C2 exon
chr10:93471309-93471445
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAAATCTTTTCCTGTTGAAGGCC
3' ss Score
5.94
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCTGACCTCACAATAGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTAGAGAAGAAGGAAGGAAGAATAGATGATTTATTAAGA
Seq A exon
GCCAACTGTGATTTGAGACGACAGATAGATGAACAGCAAAAGATGCTAGAGAAATACAAGGAACGATTAAATAGATGTGTCACCATGAGCAAGAAGCTCCTTATAGAAAAG
Seq C2 exon
TCAAAACAAGAGAAGATGGCATGCAGGGACAAGAGCATGCAGGACCGATTGCGATTAGGTCACTTTACAACTGTCCGGCATGGAGCCTCTTTTACTGAACAGTGGACAGATGGTTATGCTTTCCAAAACCTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.054 C2=0.435
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCACTAGAAAACAGTAAGAACT
R:
TGAGGTTTTGGAAAGCATAACCA
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]