GgaEX1058710 @ galGal4
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr27:2377439-2380526:+
Coord C1 exon
chr27:2377439-2377531
Coord A exon
chr27:2378904-2379014
Coord C2 exon
chr27:2380390-2380526
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTGTTCACTTTTAGGCC
3' ss Score
11.55
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCGGACCTCACAATGGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTGGAGAAGAAGGAAGGGAGGATAGATGACTTACTAAGA
Seq A exon
GCCAACTGTGATTTGAGACGGCAGATAGATGAACAACAAAAGATGCTGGAGAAGTACAAGGAGCGGTTGAATAGATGTGTAACGATGAGCAAGAAGCTCCTTATAGAAAAG
Seq C2 exon
TCAAAACAGGAGAAGATGGCGTGCAGAGATAAGAGCATGCAGGATCGATTGAGGCTAGGTCACTTCACTACGGTGCGGCATGGGGCGTCCTTCACCGAGCAGTGGACAGATGGCTATGCCTTCCAGAACCTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.045 C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACCTCACAATGGAAAAA
R:
TGAGGTTCTGGAAGGCATAGC
Band lengths:
226-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]