DreEX0079102 @ danRer10
Exon Skipping
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19548156-19552831:+
Coord C1 exon
chr3:19548156-19548248
Coord A exon
chr3:19552433-19552543
Coord C2 exon
chr3:19552695-19552831
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTGGGTTTGTGCACTTCAGGTG
3' ss Score
7.45
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TCTGAGCTGACTATGGAGAAATTAGCAGCGCTGGAGAGCAGTAAGAGTTCAGATCTGGAGAAGAAAGAAGGACGTATCGATGACCTGCTCAGG
Seq A exon
GTGAACTGTGACCTGCGCAGACAGATCGATGAGCAGCAGAAGATGCTGGAGTGGTGTAAAGAACGCCTCAATAAATGTGTGACCATGAGTAAGAAACTGCTTATCGAAAAG
Seq C2 exon
TCCAAACAGGAGAAAATTGCTTGCAGAGAAAAGAGCATGCAGGACCGACTACGACTTGGTCATTTCACCACTGTACGACACGGAGCCTCATTTACAGAGCAGTGGACGGATGGATATGCGTTTCAGAATCTAGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779-'12-16,'12-13,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACTATGGAGAAATTAGCAGC
R:
TTGACTAGATTCTGAAACGCATATCC
Band lengths:
226-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]