MmuEX0048183 @ mm9
Exon Skipping
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45680633-45683715:-
Coord C1 exon
chr16:45683522-45683715
Coord A exon
chr16:45681686-45681724
Coord C2 exon
chr16:45680633-45680861
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCTATACTCTTTCACTGCAGCTG
3' ss Score
8.89
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
CAGTAACAACAAAGGCGGTCTCCTGGTCCACTTTTGGATTGTGTTTGTTATGCCACATGCCAAGGGCCACATCTTCTGTGAGGAGTGTGTGGCGGCCATCTTGAAGGACTCCATTCAAACCAGTATCATAAACCGCACTTCTGTGGGGAGCTTGCAGGGTCTGGCTGTGGATATGGACTCTGTGGTATTAAATG
Seq A exon
CTGGGCTCCGGTCAGATTACTCTTCAGCTGTAGGATCTG
Seq C2 exon
ACAACGGCTGCTCCCGGTACTTGTATGCAGACCATCTGACCCTCCGCTACCCTCTGGAGATTTCCGCAACCTCGGGACAACTAATGTGTCACTTCAAGTTGGTGGCCATCGTGGGTTATCTGATTCGTCTCTCCATTGAATCCATCCAATTGGAAGCCGACAACTGTATCACCGACTCCCTGACTGTTTATGACTCCCTCTTGCCAATCCGGAGTGCCATTCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NO
C2:
PF0043115=CUB=PU(65.8=94.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTGGCTGTGGATATGGA
R:
ATTAGTTGTCCCGAGGTTGCG
Band lengths:
123-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: