BtaEX6000897 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57233685-57236390:+
Coord C1 exon
chr1:57233685-57233878
Coord A exon
chr1:57235388-57235426
Coord C2 exon
chr1:57236162-57236390
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGTGTACTTTTTCATTGCAGCTG
3' ss Score
10.03
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
CAGTAACAACAAAGGTGGCCTCCTTGTCCACTTTTGGCTTGTATTTGTCATGCCTCATGCCAAGGGCCACATCTTCTGTGAGGACTGTGTGGCTGCCATCTTGAAGGACTCCATCCAGACGAGCATCATAAACCGGACCTCTGTGGGGAGCCTGCAGGGTCTGGCTGTGGACATGGACTCTGTGGTATTAAATG
Seq A exon
CTGGTCTTCGGTCAGATTACTCTTCAACCATAGGATCTA
Seq C2 exon
ACAAAGGCTGCTCCCAGGACTTCTACGCAGATCATCTGTCTCTCCGCTACCCTCTGGAGATTTCAACAACCTCAGGGAGGCTGATGTGCCACTTCAAGCTGGTGGCCACAGTGGGCCATCTGATCCGACTCTCGATAGAGTCTGTCCAGATTGAAGCCGACAACTGTGTCACTGACTCCCTGACCATTTATGACTCTCTCTTGCCAATCCGGAGCACCATCTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NO
C2:
PF0043115=CUB=PU(65.8=94.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCATCCAGACGAGCATCA
R:
TCTGCGTAGAAGTCCTGGGAG
Band lengths:
118-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]