GgaEX1059439 @ galGal3
Exon Skipping
Gene
ENSGALG00000015389 | E1C7W0_CHICK
Description
NA
Coordinates
chr1:91895478-91901296:+
Coord C1 exon
chr1:91895478-91895671
Coord A exon
chr1:91896578-91896616
Coord C2 exon
chr1:91901068-91901296
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATGACCTTTCTTCTGTGCAGCCG
3' ss Score
8.87
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TAACAACAATAATGGAGGCCTTCTTATTCACTTCTGGATCGTATTTGTGGTACCACAGGCAAAAGGCCAAGCGCTGTGTGAGGACTGTGTGGCTGCCATTTTAAAGGATTCTATTCAGACAAGCATTGTTAATCGGACCTCGGTGGGAACTCTTCAGGACCTTGCAGTTGACATGGACTCCATCGTACTAAGTG
Seq A exon
CCGGTCTTCGGTCAGATTACTGGTCAACAACGGGAACAG
Seq C2 exon
GATCAAATTGTGTGTATGATCTGCATGCTGATCGTCTACATGAGCATTTTCCTCTGGATATCCACACTACCTCTGGGGGAACGATCTGCTATCTTAAACTGATAGCATTAGTGGGTCATCTTATTCGTCTTTCAGTAGTATCCCTTCAGATTGAAGCAGATAACTGCATCACTGACTCACTAACTATTTATGACTCTTTGATGCCAATCAAACATAAGACACTATATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NO
C2:
PF0043115=CUB=PU(61.6=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCTTGCAGTTGACATGG
R:
ATCGTTCCCCCAGAGGTAGTG
Band lengths:
124-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]