RnoEX6056999 @ rn6
Exon Skipping
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60111813-60114796:+
Coord C1 exon
chr11:60111813-60112006
Coord A exon
chr11:60113766-60113804
Coord C2 exon
chr11:60114568-60114796
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTGTTTCAATGCAGCTG
3' ss Score
9.73
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
CAGTAACAACAAAGGCGGTCTCCTGGTCCACTTTTGGATTGTGTTTGTCATGCCCCATGCCAAGGGCCACATCTTCTGTGAGGAATGTGTGGCAGCCATCTTGAAGGACTCCATCCAAACCAGTATCACAAACCGCACCTCTGTGGGGACCTTGCAGGGTCTGGCCGTGGATATGGACTCTGTGGTATTAAATG
Seq A exon
CTGGGCTCCGGTCGGATTACTCTTCAGCGGTAGGATCTG
Seq C2 exon
ACAATGGCTGCTCCCAGTACTTCTATGCAGATCATCTGACCCTCCGCTACCCTCTGGAGATTTCCGCAACTTCGGGACAGCTAATGTGTCACTTCAAGCTGGTGGCCATAGTGGGTTATCTGATTCGTCTCTCAATTGAGTCCATTCAATTAGAAGCTGACAACTGTATTACAGACTCCCTAACTGTTTACGACTCCCTCTTGCCAATCCGGAGTGCCATTCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145-'9-11,'9-10,13-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NO
C2:
PF0043115=CUB=PU(65.8=94.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCATCTTGAAGGACTCC
R:
AGAAGTACTGGGAGCAGCCAT
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]