DreEX0008918 @ danRer10
Exon Skipping
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21709099-21711123:-
Coord C1 exon
chr24:21710930-21711123
Coord A exon
chr24:21710658-21710693
Coord C2 exon
chr24:21709099-21709327
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTCTTTTTTCCCAGTTG
3' ss Score
10.14
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TAACAATAATCAAGGTGGTGTGCTGGTGCACTTCTGGATGGTGTTTTTGGTTCCACAATTGAAGACACCAGTGGTGTGTGAGGAGTGTGTCAGTGCCATCCTGAGGGACTCTGTGCTTATGAGTATGAAGAACAGGTCTACAGTGGGATTTCTACAGGGTCTTCCTGTCGACATTGACTCCATTCTCGTCAATG
Seq A exon
TTGCTTTACGGTCAGATTATACATCAACAGCTGTGG
Seq C2 exon
GATCTCAGTGTGTGGATAAGCTGTACGCAGGTGTTCCTGGTGTGAATGTTCCCCTCAATGTGTTTTCCTCATGGGGAGGCTTGAGCTGCTACATCAAACTGACAAGTGTCCCAGGTTCTGTCATCCAGCTCACTGTGAAGAGTTTGCGCCTTGATCCGAGTGACTGCATTTATGATGCCCTCATTGTATATGATGCTCTGCTTCCCATGAGAGGCATGATTCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NO
C2:
PF0043115=CUB=PU(57.8=67.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTCGACATTGACTCCA
R:
GATGTAGCAGCTCAAGCCTCC
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]