MmuEX0048667 @ mm9
Exon Skipping
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49202796-49214051:-
Coord C1 exon
chr6:49213837-49214051
Coord A exon
chr6:49213499-49213579
Coord C2 exon
chr6:49202796-49203107
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTCGCTCCCTTTCCTCTCAGCTT
3' ss Score
8.36
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGTTTCTGGCGGCACGGGCGCCATTTTGCCTGAACGTGCGAGCTGGTGGGAGTGGAACGCACTGGCCGTTGTAGCCGTCGCCTTCTTCCTCCCCACAGTCCGAACAGCGCGGTGACTAGGCCGTCGGCCCTCGAGCCGAGACATATCTCTTATTTAGTTCTCGGGAGCGCCTGGCCGACATGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGA
Seq A exon
CTTCCCATCTCTGCTCCGAGGTGCGGGTCCCCGGCGCGGTGGGGCAGGAGGCGGCGGGGCGCTCCCTCCGGCCGGATAGTG
Seq C2 exon
GTTAATGTTCGTGAAGAAATTGAAGAGTTTTTTCCAAGAATGTGGAAGATAAATCAAGATAAAAGAAGGCTAATGAAAAGTATTAAAGATCAGAAAATTAAAATTGAATGGGGGAAAAAATTGAACAGAAGATTGGTCAGATAGAAGCACTTGAATATTTTTTTAAGGCTATTTTGAATTGTTTGAATTGGGGAAGAATACACGAAGTATGAAAAATGAAAAACTCAATGAAGAATGAAGAGAAGTAGAAAGCAAGAGTGAAGTAGAATTAAAAGAATCTGGAAGAATGAATGGGTCCTAGGTTAAGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-'1-2,'1-1,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104084=Ufd2P_core=PU(20.0=83.3)
A:
NO
C2:
PF104084=Ufd2P_core=PD(76.0=79.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACAACTTCGAGGGCAG
R:
TCAAGTGCTTCTATCTGACCAA
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: