MmuEX0048667 @ mm10
Exon Skipping
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49252382-49264033:-
Coord C1 exon
chr6:49263838-49264033
Coord A exon
chr6:49263500-49263580
Coord C2 exon
chr6:49252382-49252515
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTCGCTCCCTTTCCTCTCAGCTT
3' ss Score
8.36
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCCATTTTGCCTGAACGTGCGAGCTGGTGGGAGTGGAACGCACTGGCCGTTGTAGCCGTCGCCTTCTTCCTCCCCACAGTCCGAACAGCGCGGTGACTAGGCCGTCGGCCCTCGAGCCGAGACATATCTCTTATTTAGTTCTCGGGAGCGCCTGGCCGACATGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGA
Seq A exon
CTTCCCATCTCTGCTCCGAGGTGCGGGTCCCCGGCGCGGTGGGGCAGGAGGCGGCGGGGCGCTCCCTCCGGCCGGATAGTG
Seq C2 exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCAGAGAGCAGGTCAGGATCTCGTAGTCCATCACGGGTGTCCAAACATTCTGAATCCCATTCTCGATCAAGATCAAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF104084=Ufd2P_core=PU(20.0=83.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000031841fB4232
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTAGTTCTCGGGAGCGCCT
R:
CAGAATGTTTGGACACCCGTGA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types