RnoEX0093152 @ rn6
Exon Skipping
Gene
ENSRNOG00000009156 | Tra2a
Description
transformer 2 alpha homolog [Source:RGD Symbol;Acc:1562563]
Coordinates
chr4:78913333-78924181:-
Coord C1 exon
chr4:78923982-78924181
Coord A exon
chr4:78923644-78923724
Coord C2 exon
chr4:78913333-78913466
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTCGCTCCCTTTCCTCTCAGCTT
3' ss Score
8.36
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCGGCGCCATTTTGCCCGAGCGTGCGAGCTAGTGGGAGTGGAACGCACCGGCCGTTGTAGCCGTCGCCTTCTTCCTCCCCACAGTCAAACAGCGCGGTGACTAGGCCGTCGGCCCTCGAGCCGAGACATATCTCTTGTTTAGTGCTCGGGAGCGCCTGGCCAACATGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGA
Seq A exon
CTTCCCATCTCTGCTCCGAGGTGCGGGTCCCCTGCGCGGTGGGGCAGGAGGCGGCGGGGCGCTCCCTCCGGCCGGATAGTG
Seq C2 exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCAGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACATTCTGAATCCCATTCTCGATCAAGATCAAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009156_MULTIEX2-1/3=C1-C2
Average complexity
ME(1-2[99=100];1-3[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=1.000 C2=0.844
Domain overlap (PFAM):
C1:
PF104084=Ufd2P_core=PU(20.0=83.3)
A:
NO
C2:
PF0345912=TOBE=PD(31.7=50.0)
Main Inclusion Isoform:
ENSRNOT00000012325fB15533
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTTCCTCCCCACAGTCA
R:
TTACACGAGCAGGAGTTCCCG
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]