DreEX6072811 @ danRer10
Exon Skipping
Gene
ENSDARG00000007863 | tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
Coordinates
chr19:20593564-20598961:+
Coord C1 exon
chr19:20593564-20593737
Coord A exon
chr19:20594986-20595119
Coord C2 exon
chr19:20598802-20598961
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATGTATTGCTGTGATGTTAGGAA
3' ss Score
2.13
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GATTCGCCTCCCACAGTACACCGCGCGTTTCAGATGGTCGGCCATTTTCTGCAGTTACATTAGGAGCGGAAGTCTTCGTCGAAGAGCGTCTTCATATCCACGCTTTTTTTTTTACCAGTCAATAATATTTTTAAAACAATGAGTGATACTGAAGAGCAACAATTCCAGAGGAGG
Seq A exon
GAATCTCGCTCGGCGTCCAAATCGGATCGGGGGAGTCCTGCCCAACCCAAGATGGAGAGCAGGTCTGGTTCTCCCAGCCCTTCCAGAGCATCCAAGCGTTCTGATTCAAGATCAAGATCACGCTCCAAGTCCAG
Seq C2 exon
GTCCCGCTCTCGTCGGCATTCCAATCGGCGCTACAGCAGGTCTCGGTCCCACTCCCACCGGAAAAAATCTCGTTCTCGCTCCTACAGCCCTGAATCCCGACGCAGAAGGAGCCGAAGTGCATCGCCCAATTCTAACCGCCGCAAACACGCTGGCAGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007863-'0-4,'0-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF086487=DUF1777=PU(6.5=83.3)
A:
PF086487=DUF1777=PU(21.8=96.4)
C2:
PF086487=DUF1777=FE(34.4=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGAAGTCTTCGTCGAAG
R:
GTTTGCGGCGGTTAGAATTGG
Band lengths:
257-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]