MmuEX6004309 @ mm9
Exon Skipping
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49200862-49214051:-
Coord C1 exon
chr6:49213837-49214051
Coord A exon
chr6:49202381-49202514
Coord C2 exon
chr6:49200862-49201021
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATACTGTCTTCTTTGTTAGGAG
3' ss Score
6.9
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTTTCTGGCGGCACGGGCGCCATTTTGCCTGAACGTGCGAGCTGGTGGGAGTGGAACGCACTGGCCGTTGTAGCCGTCGCCTTCTTCCTCCCCACAGTCCGAACAGCGCGGTGACTAGGCCGTCGGCCCTCGAGCCGAGACATATCTCTTATTTAGTTCTCGGGAGCGCCTGGCCGACATGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGA
Seq A exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCAGAGAGCAGGTCAGGATCTCGTAGTCCATCACGGGTGTCCAAACATTCTGAATCCCATTCTCGATCAAGATCAAAGTCCAG
Seq C2 exon
GTCAAGGTCAAGGAGGCATTCGCATAGACGCTACACTCGATCCAGGTCACACTCTCATAGGAGACGATCTCGGAGTAGGTCCTATACACCCGAGTATAGGCGGCGGAGGAGCCGGAGTCACTCTCCAATGTCTAATCGCAGAAGGCATACTGGAAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-'1-5,'1-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF104084=Ufd2P_core=PU(20.0=83.3)
A:
PF086487=DUF1777=FE(33.6=100)
C2:
PF086487=DUF1777=FE(40.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTTGCCTGAACGTGCGAG
R:
AGTGTGACCTGGATCGAGTGT
Band lengths:
247-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: