RnoEX0093146 @ rn6
Exon Skipping
Gene
ENSRNOG00000009156 | Tra2a
Description
transformer 2 alpha homolog [Source:RGD Symbol;Acc:1562563]
Coordinates
chr4:78911151-78924181:-
Coord C1 exon
chr4:78923982-78924181
Coord A exon
chr4:78913333-78913466
Coord C2 exon
chr4:78911151-78911310
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATACTGTCTTCTTTGTTAGGAG
3' ss Score
6.9
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCGGCGCCATTTTGCCCGAGCGTGCGAGCTAGTGGGAGTGGAACGCACCGGCCGTTGTAGCCGTCGCCTTCTTCCTCCCCACAGTCAAACAGCGCGGTGACTAGGCCGTCGGCCCTCGAGCCGAGACATATCTCTTGTTTAGTGCTCGGGAGCGCCTGGCCAACATGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGA
Seq A exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCAGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACATTCTGAATCCCATTCTCGATCAAGATCAAAATCCAG
Seq C2 exon
GTCGAGGTCACGGAGGCATTCTCATAGACGCTACACGCGATCCAGGTCACACTCTCACAGAAGACGGTCGCGAAGTAGGTCCTATACACCAGAGTACAGGCGGAGGAGGAGCCGGAGCCACTCCCCCATGTCAAACCGCAGAAGGCACACTGGCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009156-'0-9,'0-4,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.844 C2=1.000
Domain overlap (PFAM):
C1:
PF104084=Ufd2P_core=PU(20.0=83.3)
A:
PF0345912=TOBE=PD(31.7=50.0)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000012325fB15535
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTAGCCGTCGCCTTCTTC
R:
CTCCGCCTGTACTCTGGTGTA
Band lengths:
252-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]