MmuEX6004309 @ mm10
Exon Skipping
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49250863-49264010:-
Coord C1 exon
chr6:49263838-49264010
Coord A exon
chr6:49252382-49252515
Coord C2 exon
chr6:49250863-49251022
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATACTGTCTTCTTTGTTAGGAG
3' ss Score
6.9
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTGGTGGGAGTGGAACGCACTGGCCGTTGTAGCCGTCGCCTTCTTCCTCCCCACAGTCCGAACAGCGCGGTGACTAGGCCGTCGGCCCTCGAGCCGAGACATATCTCTTATTTAGTTCTCGGGAGCGCCTGGCCGACATGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGA
Seq A exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCAGAGAGCAGGTCAGGATCTCGTAGTCCATCACGGGTGTCCAAACATTCTGAATCCCATTCTCGATCAAGATCAAAGTCCAG
Seq C2 exon
GTCAAGGTCAAGGAGGCATTCGCATAGACGCTACACTCGATCCAGGTCACACTCTCATAGGAGACGATCTCGGAGTAGGTCCTATACACCCGAGTATAGGCGGCGGAGGAGCCGGAGTCACTCTCCAATGTCTAATCGCAGAAGGCATACTGGAAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-'0-6,'0-5,11-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF104084=Ufd2P_core=PU(20.0=83.3)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTAGCCGTCGCCTTCTTC
R:
GCCGCCTATACTCGGGTGTAT
Band lengths:
252-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types