GgaEX1060131 @ galGal4
Exon Skipping
Gene
ENSGALG00000010973 | TRA2A
Description
transformer-2 protein homolog alpha [Source:RefSeq peptide;Acc:NP_001006360]
Coordinates
chr2:31416160-31437334:-
Coord C1 exon
chr2:31437114-31437334
Coord A exon
chr2:31428358-31428491
Coord C2 exon
chr2:31416160-31416275
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATACTGTTCTTTTTGTTAGGAG
3' ss Score
6.11
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GAAGCGGAGGCGCCATTTTGCGCTGCTGCGGGAGACGGGTTGGGAGGCTTTGGCGGGAGGGAGGCGGCGGTGGCGGTAGGGATAGCATTAACCGCGGTAACCATAGCGGTAGCGGCGGTGGGTGCGGTCGCTGCTCGGGACTAGCGTCCCCGTTCGCCCGGCCCCGCGGTCAGGACTTTGCCGACATGAGCGACGTGGAGGAGAACAACTTCGAGGGGAGG
Seq A exon
GAGTCTCGCTCCCAGTCAAAATCTCCAGCTGGGAGTCCTGCTCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGCAGTCCATCGAGAGCTTCCAAACATTCTGAATCACACTCTAGGTCAAGATCAAAATCGAG
Seq C2 exon
GCAATGGAGCATGCAAACGGAATGGAGCTGGATGGCAGGAGGATTCGGGTGGATTACTCCATCACCAAGAGAGCGCATACACCCACCCCAGGCATATACATGGGCAGGCCGACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010973_MULTIEX1-4/8=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=1.000 C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PD(21.1=38.5)
Main Skipping Isoform:
ENSGALT00000017877fB13147
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTAACCGCGGTAACCAT
R:
GTCGGCCTGCCCATGTATATG
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]