BtaEX0037532 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012622 | TRA2A
Description
Bos taurus transformer 2 alpha homolog (Drosophila) (TRA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046380]
Coordinates
chr4:32256181-32269539:-
Coord C1 exon
chr4:32269346-32269539
Coord A exon
chr4:32259420-32259553
Coord C2 exon
chr4:32256181-32256346
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATACTGTCTTCTTTGTTAGGAG
3' ss Score
6.9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CATTTTGCTGGAGCCTGCGACCGAGTGGGAGTGGAGTGGAGCGGCCGTTGTTGCCGACTCTTTTCTCCTCCCCACGGTCCAGTCAGCGGGTTGATTAGGCCATCGGCCCTCAAGCCGAGACTTGTCTCTTATTTAGTTCTGGGGAGCGCCTGGCCGACATGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGA
Seq A exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACACTCTGAATCCCATTCTCGATCAAGATCAAAATCCAG
Seq C2 exon
GTCGAGGTCAAGGAGGCATTCTCATAGACGTTACACTCGATCCAGATCCCATTCTCACTCTCATAGGAGACGATCTCGAAGTAGGTCATATACACCAGAATACCGGCGTCGAAGGAGCCGAAGTCATTCTCCAATGTCTAACCGGAGAAGACATACAGGCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012622-'0-4,'0-3,7-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF104084=Ufd2P_core=PU(20.0=83.3)
A:
PF086487=DUF1777=FE(33.8=100)
C2:
PF086487=DUF1777=FE(42.3=100)
Main Skipping Isoform:
ENSBTAT00000016756fB7336
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCAGCGGGTTGATTAGG
R:
TGGAGAATGACTTCGGCTCCT
Band lengths:
249-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development