HsaEX6007486 @ hg38
Exon Skipping
Gene
ENSG00000164548 | TRA2A
Description
transformer 2 alpha homolog [Source:HGNC Symbol;Acc:HGNC:16645]
Coordinates
chr7:23516363-23532041:-
Coord C1 exon
chr7:23531789-23532041
Coord A exon
chr7:23521707-23521840
Coord C2 exon
chr7:23516363-23516528
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATACTGTCTTCTTTGTTAGGAG
3' ss Score
6.9
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCCCGCCCCCTTTACGTCGTGCTCTGAGGAGGCCAGGAGATTTCTGGCGGCGCCGGCGCCATTTTGCTGGAGCCTGCGACCGAGTGGGAGTGGAGTGGAGCGGCTGTGGTTGCCGACTCTTTCCTCTTCCCCACGGTCCAGTCAGCGGGTTAATTAGGCCATCGGCCCTCGAGCCGAGACTTGTCTCTTATTTAGTTCTGGGGAGCGCCTCGTCGACATGAGTGATGTGGAGGAAAACAACTTCGAGGGCAGA
Seq A exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACACTCTGAATCCCATTCTCGATCAAGATCAAAATCCAG
Seq C2 exon
GTCGAGGTCAAGGAGACATTCTCATAGACGTTACACTCGATCCAGATCCCACTCTCACTCTCATAGGAGACGATCTCGAAGTAGATCATATACACCAGAATACCGGCGGCGAAGGAGCCGAAGCCATTCTCCAATGTCTAACCGGAGAAGACATACTGGCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164548_MULTIEX1-3/5=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.783 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCCGAGACTTGTCTCTT
R:
TGCCAGTATGTCTTCTCCGGT
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains