MmuEX0053701 @ mm9

Exon Skipping

Gene

ENSMUSG00000050855 | Zfp940

Description

zinc finger protein 940 [Source:MGI Symbol;Acc:MGI:2446235]

Coordinates

chr7:30628269-30631979:-

Coord C1 exon

chr7:30631853-30631979

Coord A exon

chr7:30631488-30631583

Coord C2 exon

chr7:30628269-30631267

Length

96 bp

Sequences

Splice sites

3' ss Seq

AAAAAAAATCTTCTGGGCAGGAC

3' ss Score

4.87

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

AGACTGATGACGTTCAGAGACGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAGGAGTTTATACAGAGATGTGATGCTGGAGAGCTACAGCCACCTCGTCTCAGTGG

Seq A exon

GACTTTTTGTTTATCGGCCACATCTGTTCTCCTTGTTGGAAAAAGGACAAGACCCCTGGATGATTTTGAGGGATGAGACAAGGGGACCTTATCCAG

Seq C2 exon

ACATAGATTTCAGTTCTCAGAACAAGAAGTTCCTGGGAAAACCTAGCACATATGAAGAATTATCTCAAAGGGAAATGAAGGAATATTTTAGAAAACGCAGTCTTGAAGATTTCTGTTTTGGAGATGGCTGGGATGGCAAAAATCAGTTTCAAACGCATCAAAATCAGGAATATTTTAAGCAACTGGCAGTCGCCTATGAAAAAGTGCTCACTGTGAACCAGGGTATAGTTTTCAACAACCACCAGAGACTGAATGCAGGAGAGAAAGCAACTGAAATTCAGTGTGAAAAAGCCCTTACTGTGGAATCTGACCGTATTCTTCCTCAGCTAACTCCCCCTGGTAACAAAGTCCACAAAGACAAGGAGTGTGGGGACACCTCTGCTCCTGAATCGGAGCGCACACACTGTCAGAGAGCTCACTGTCCCCAGACCCCTCAGCAGGGGAAGGAATCTGGAGGGCCGTTTGGTTTGCCTTCAGGAATACTGGGCCTTCCGCAAGGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000050855-'9-7,'9-6,10-7

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.118

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=100.0)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF127602=Zn_Tnp_IS1595=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=5.3)

Main Inclusion Isoform:

ENSMUSP00000082947