MmuEX1007885 @ mm10
Exon Skipping
Gene
ENSMUSG00000061740 | Cyp2d22
Description
cytochrome P450, family 2, subfamily d, polypeptide 22 [Source:MGI Symbol;Acc:MGI:1929474]
Coordinates
chr15:82371822-82372926:-
Coord C1 exon
chr15:82372785-82372926
Coord A exon
chr15:82372390-82372577
Coord C2 exon
chr15:82371822-82371963
Length
188 bp
Sequences
Splice sites
3' ss Seq
AGGTGATGCTGTCCTTCCAGGCC
3' ss Score
6.58
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAGAACCTGCGCACGGTAGTGGGTGACCTGTTCTCTGCAGGGATGGTGACCACCTCAACCACACTGTCCTGGGCCCTGATGCTCATGATCCTGCATCCAGATGTGCAGC
Seq A exon
GCCGAGTACAACAGGAAATCGATGAAGTCATAGGGCAGGTGCAGTGTCCAGAGATGGCAGACCAGGCTCGCATGCCCTACACCAATGCTGTCATTCATGAGGTGCAGCGCTTTGCAGACATTCTCCCTCTTGGTGTACCTCACAAGACTTCTCGTGACATTGAACTACAGGGCTTCCTTATCCCTAAG
Seq C2 exon
GGGACGACCCTCATCACCAACCTGTCCTCCGCGCTAAAAGATGAGACTGTCTGGGAGAAGCCCCTCTGCTTCCATCCTGAACACTTCCTGGATGCCCAGGGCCACTTTGTGAAGCCTGAGGCCTTCATGCCATTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061740-'19-11,'19-9,21-11
Average complexity
C1
Mappability confidence:
78%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
PF0006717=p450=FE(13.4=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGAGAACCTGCGCACG
R:
TGCTGAGAATGGCATGAAGGC
Band lengths:
256-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types