MmuEX1009052 @ mm10
Exon Skipping
Gene
ENSMUSG00000027012 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:MGI Symbol;Acc:MGI:107750]
Coordinates
chr2:71246689-71247388:+
Coord C1 exon
chr2:71246689-71246784
Coord A exon
chr2:71247013-71247175
Coord C2 exon
chr2:71247289-71247388
Length
163 bp
Sequences
Splice sites
3' ss Seq
AAGACAAACTCTTTTTCCAGCTC
3' ss Score
5.03
5' ss Seq
AGGGTAATA
5' ss Score
5.47
Exon sequences
Seq C1 exon
ATGAGGAGGAGGAAGATGATGTAGCAACTCCTAAACCTCCTGTTGAACCTGAAGAAGAGAAAACTTTGAAAAAAGACGAAGAGAATGATAGCAAAG
Seq A exon
CTCCACCTCATGAACTAACTGAAGAAGAAAAGCAACAGATTTTACACTCAGAAGAATTTTTAAGTTTCTTTGACCATTCTACGAGAATTGTAGAAAGAGCCCTTTCTGAGCAGATTAACATCTTCTTTGACTACAGTGGGAGAGACTTGGAAGACAAAGAAGG
Seq C2 exon
GGAGATTCAAGCAGGTGCTAAGCTGTCATTAAATCGACAGTTCTTTGATGAGCGTTGGTCAAAGCATCGAGTTGTTAGTTGTTTGGATTGGTCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027012-'32-35,'32-34,34-35
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.255 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAGGAAGATGATGTAGCA
R:
GACCAATCCAAACAACTAACAACTCG
Band lengths:
186-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types