GgaEX1021296 @ galGal4
Exon Skipping
Gene
ENSGALG00000009551 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001006519]
Coordinates
chr7:17467840-17468521:-
Coord C1 exon
chr7:17468432-17468521
Coord A exon
chr7:17468032-17468194
Coord C2 exon
chr7:17467840-17467939
Length
163 bp
Sequences
Splice sites
3' ss Seq
AGCCTGTAATCCTTTTCCAGCTG
3' ss Score
6.89
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
ATGAGGAAGAAGAAGATGATGTGGTTGCGCCAAAGCCGTTAGTTGAGCCTGAGGAAGTAAAAACATTCAAAAAGGAAGAGGAGGAGGAAG
Seq A exon
CTGCCCCTCACGAACTTACGGAAGAGGAAAAGCAACAAATCTTGCATTCTGAAGAGTTTTTAAGTTTCTTTGACCACTCTACAAGGATTGTTGAAAGAGCCCTTTCTGAGCAAATCAATATTTTCTTTGACTACAGTGGAAGAGACTTAGAAGACAAAGAAGG
Seq C2 exon
GGAGATTCAAGCAGGAGCAAAACTGTCCTTAAATAGGCAGTTTTTTGATGAACGTTGGTCAAAGCATCGTGTTGTCTGTTGTTTGGACTGGTCGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009551-'14-14,'14-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.236 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGAAGAAGAAGATGATGTGGT
R:
GACGACCAGTCCAAACAACAGA
Band lengths:
186-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]