DreEX6019974 @ danRer10
Exon Skipping
Gene
ENSDARG00000103195 | dync1i2b
Description
dynein, cytoplasmic 1, intermediate chain 2b [Source:ZFIN;Acc:ZDB-GENE-090121-1]
Coordinates
chr6:3783107-3785004:+
Coord C1 exon
chr6:3783107-3783193
Coord A exon
chr6:3783550-3783712
Coord C2 exon
chr6:3784905-3785004
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTGATGTTTGTGTGTGCAGCGT
3' ss Score
6.95
5' ss Seq
GGGGTGTGT
5' ss Score
3.14
Exon sequences
Seq C1 exon
ATGAAGAGGAGGAGGAAGATTTGGCTGTGATGCAGCCTGTAATGGAGCCTCAAGAGGAGAAAGACTCTCAGAAAGAAGAAGATGAAG
Seq A exon
CGTCTCCTCATGAGCTGACGGAAGAAGAGAAACAGCAGATTCTTCACTCGGAGGAGTTCGTGACGTTCTTCGACCACAGCTCTCGCATCATGGAGCGCGCTCTGTCTGAGCAGGTGGACGTGTTCTTCGACTACAGCGGACGAGACCTGCAGGATAAAGAGGG
Seq C2 exon
GGAGTCTCAGGCTGGAGCCAAACTTTCGCTGAACAGACAGTTTGCGGACGAGCGCTGGTCTAAACACCGAGTGGTCACCTGTCTCGACTGGTCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103195-'6-11,'6-10,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.327 C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGGAGGAGGAAGATTTGG
R:
CTGTGGAGACCAGTCGAGACA
Band lengths:
186-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]