BtaEX6009071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002646 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001069351]
Coordinates
chr2:24827834-24828518:-
Coord C1 exon
chr2:24828423-24828518
Coord A exon
chr2:24828039-24828201
Coord C2 exon
chr2:24827834-24827933
Length
163 bp
Sequences
Splice sites
3' ss Seq
GAAAAACATTTGTTTTACAGCTC
3' ss Score
6.77
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATGAAGAAGAAGAAGATGACGTGGTGACTCCTAAGCCACCTATTGAACCTGAGGAAGAGAAAACTTTAAAGAAAGATGAAGAAAGTGATAGTAAAG
Seq A exon
CTCCTCCTCATGAGCTGACTGAAGAAGAAAAGCAGCAAATCTTGCACTCTGAGGAATTTTTAAGTTTCTTTGACCATTCCACAAGAATTGTAGAAAGAGCTCTTTCAGAGCAGATTAACATCTTCTTTGACTACAGTGGAAGAGATTTGGAAGACAAAGAAGG
Seq C2 exon
AGAGATTCAAGCAGGTGCTAAACTGTCATTAAATCGACAGTTTTTTGACGAACGTTGGTCAAAGCATCGAGTCGTTAGTTGTTTGGATTGGTCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002646-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.255 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGAAGAAGATGACGTGGTG
R:
TGAGATGACCAATCCAAACAACT
Band lengths:
194-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]