RnoEX6017375 @ rn6
Exon Skipping
Gene
ENSRNOG00000009781 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:RGD Symbol;Acc:620174]
Coordinates
chr3:57849450-57850253:+
Coord C1 exon
chr3:57849450-57849545
Coord A exon
chr3:57849902-57850064
Coord C2 exon
chr3:57850154-57850253
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACAAAATGTTTTTTTTCCAGCTC
3' ss Score
8.28
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
ATGAGGAGGAGGAAGATGACGTAGCAGCTCCTAAGCCTCCTGTTGAACCTGAAGAAGAGAAAATTTTAAAAAAAGACGAAGAGAATGATAGCAAAG
Seq A exon
CTCCCCCTCATGAACTAACTGAAGAAGAAAAGCAACAAATTTTACACTCAGAAGAATTTTTAAGTTTCTTTGACCATTCTACAAGAATTGTAGAAAGAGCCCTCTCTGAGCAGATTAACATCTTCTTTGACTACAGTGGGAGAGATTTGGAAGACAAAGAAGG
Seq C2 exon
GGAGATTCAAGCAGGTGCTAAGCTGTCATTAAATCGACAGTTTTTTGATGAGCGTTGGTCAAAGCATCGAGTTGTTAGTTGCTTGGATTGGTCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009781-'23-19,'23-17,25-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.255 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGGAGGAAGATGACGT
R:
CCAATCCAAGCAACTAACAACTCG
Band lengths:
186-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]