MmuEX1013861 @ mm10
Exon Skipping
Gene
ENSMUSG00000108022 | Gm7298
Description
predicted gene 7298 [Source:MGI Symbol;Acc:MGI:3648717]
Coordinates
chr6:121778696-121779522:+
Coord C1 exon
chr6:121778696-121778779
Coord A exon
chr6:121779044-121779220
Coord C2 exon
chr6:121779435-121779522
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTCATGCCTCTCACTATCAGGTG
3' ss Score
8.66
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATGCTGAGATATCTGAAAAACTGTCCCTGGTCCTCCCACCAACAGTCGTTAAAGATTCAGCAAGAGCCCATTTCTCTGTGATGG
Seq A exon
GTGATGTCTTGAGTCCAGCCATAAAAAACACTCAAAACCTTCTCCATATGCCCTATGGCTGTGGGGAGCAGAACATGGTCCTTTTTGCTCCCAACATCTACGTACTGAAATATCTGAATGAAACCCATCAGCTGACCCAGACGATCAAGACTAAAGCCCTTGGCTTCCTCAGAGCTG
Seq C2 exon
GTTATCAGAGAGAGCTGAACTACAAACACAAGGATGGCTCCTACAGTGCCTTCGGGGATCAAAATGGCGAGAGAGAAGGAAACACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000108022_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGATATCTGAAAAACTGTCCC
R:
AAGTGTTTCCTTCTCTCTCGCC
Band lengths:
170-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types