MmuEX1016348 @ mm10
Exon Skipping
Gene
ENSMUSG00000000693 | Loxl3
Description
lysyl oxidase-like 3 [Source:MGI Symbol;Acc:MGI:1337004]
Coordinates
chr6:83038395-83048207:+
Coord C1 exon
chr6:83038395-83038609
Coord A exon
chr6:83044747-83044806
Coord C2 exon
chr6:83047988-83048207
Length
60 bp
Sequences
Splice sites
3' ss Seq
CATCTTTCTCCCTTTTGCAGAAC
3' ss Score
12.44
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTGGAGCATCAGTTGCAAGTGGAGGAGGTGCGACTCCGACCTGCGGTGGAGTGGGGAAGGAGACCCCTGCCTGTGACTGAGGGCCTGGTTGAAGTCAGGCTTCCTGAAGGCTGGTCGCAAGTGTGTGACAAAGGCTGGAGTGCCCACAACAGCCACGTAGTCTGCGGTATGCTGGGCTTCCCCGGAGAAAAGAGAGTCAACATGGCCTTCTACAG
Seq A exon
AACAATCAACAAGTTTAAAGTCAAACACAAGCCCCGAGTGGGCAGAGGGCCAAGCAAGAG
Seq C2 exon
GATGCTGGCCCAGAAGAAGCAACACTCCTTTGGTCTGCACAGTGTGGCATGTGTGGGCACAGAAGCCCACCTCTCCCTTTGCTCTCTAGAGTTCTATCGTGCCAATGACACCACCAGGTGCTCTGGGGGAAACCCTGCAGTGGTGAGCTGTGTGCTGGGCCCTCTTTATGCCACCTTTACTGGTCAGAAGAAGCAGCAACACTCTAAGCCTCAAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000693_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.476 C2=0.162
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(48.5=68.1)
A:
PF0053013=SRCR=FE(16.5=100)
C2:
PF0053013=SRCR=PD(50.5=68.9)
Main Inclusion Isoform:
ENSMUST00000000707fB12252
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGACAAAGGCTGGAGT
R:
GCAGACCAAAGGAGTGTTGCT
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types