RnoEX0050378 @ rn6
Exon Skipping
Gene
ENSRNOG00000061373 | Loxl3
Description
lysyl oxidase-like 3 [Source:RGD Symbol;Acc:1311011]
Coordinates
chr4:113871509-113880663:+
Coord C1 exon
chr4:113871509-113871723
Coord A exon
chr4:113877919-113877978
Coord C2 exon
chr4:113880444-113880663
Length
60 bp
Sequences
Splice sites
3' ss Seq
CATCTTTCTCCCTTTTGCAGAAC
3' ss Score
12.44
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTGGATCATCAGCTCCAAGTGGAGGAAGTGCGACTCCGACCAGCTGTGGAGTGGGGCAGGCGACCCCTGCCTGTGACTGAGGGCCTGGTTGAAGTCAGGCTTCCTGAAGGCTGGTCGCAAGTGTGTGACAAAGGCTGGAGTGCCCACAACAGCCACGTAGTCTGCGGTATGCTGGGTTTCCCTGGAGAAAAGAGAGTCAACATGGCCTTCTACAG
Seq A exon
AACAATCAACAAGTTTAAAGTCAAACACAAGCCCCAATTGGGCAGAGGGCCAAGTAAGAG
Seq C2 exon
GATGCTGGCCCAGAAGAAGCAACACTCCTTTGGTCTACACAGCGTGGCATGTGTGGGCACAGAAGCCCACCTCTCCCTTTGCTCTCTGGAGTTCTATCGTGCCAATGACACCACCAGATGTGCTGGTGGGAGCCCTGCAGTGGTGAGCTGTATGCTGGGCCCTCTTTATGCCACCTCTACTGGTCAGAAGAAGCAGCAACATTCTAAGCCTCAAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061373_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.476 C2=0.216
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(48.5=68.1)
A:
PF0053013=SRCR=FE(16.5=100)
C2:
PF0053013=SRCR=PD(50.5=68.9)
Main Inclusion Isoform:
ENSRNOT00000081196fB7965
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCTGCGGTATGCTGGGTT
R:
TCCAGAGAGCAAAGGGAGAGG
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]