MmuEX1016906 @ mm10
Exon Skipping
Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60501179-60595764:+
Coord C1 exon
chr3:60501179-60501423
Coord A exon
chr3:60529579-60529804
Coord C2 exon
chr3:60595594-60595764
Length
226 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTGGAGAGGGG
3' ss Score
-3.64
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TTCCTGGCGGGGCTGGCGCGGGGGAGGGGCCGCGCAGCGGCGGAAACCGGCGCGCGGCGATAAGAGGCTGCACGGCGACATGCCACAGTCTCTCGCCGCAGCCCGTCGAGTCGGGGCGCTCGCCATGCTCCCGTGACCCGGACCCGGCCAGTTCCCTTTCCCGTGGCGGGCATCCCGGAGTCGCGATCCCACAATGCCCCGGGCAGTCGGGGCCCCGGCGGGCAGCCTGCACGGCCACGTGAGAG
Seq A exon
GGGTTGGATTTGTTGGTTTCATTAAACATTTAACTACCTGTAAAATATAAACATGGCTGTTAGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTTCAAAGGGGGACTTGCTCACGACCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCTGCTTTGATTCACTGAAA
Seq C2 exon
GGTCGTTGCTCCAGAGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTAGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAATGCCATGATGCCCGGTGCCCCGTTGCAGCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763_MULTIEX1-3/14=1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.131 C2=0.285
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0064219=zf-CCCH=PU(7.7=3.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGCCACAGTCTCTCGC
R:
TAACTGCATTTGCTGGGCCAG
Band lengths:
301-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types