BtaEX0021566 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116277144-116435981:-
Coord C1 exon
chr1:116429222-116435981
Coord A exon
chr1:116394211-116394373
Coord C2 exon
chr1:116277144-116277314
Length
163 bp
Sequences
Splice sites
3' ss Seq
AATCTAAACATGGCTGTTAGTGT
3' ss Score
-0.04
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATAAGATGGAAGATACCACCGGGAGGCGGCGGGGATGCACCGCGCCAGCGCCGGCTCGGGTTTCCTTTTGCTTTCTGCGCCGATGGGCGAGTGGCAACCGCCACCCCCGGCGGACTCTTGTTAGATTGAGGGGTGGCGAGGTGGCGGGGGGCTGAGCCGCCGGGCGGCGGAAAGTTGAAGAGCATTTTTTTTTTTTCTGTCGCCGCGTGCGTTCCGGGGCTCGCGGAGTCCGCCCAGGGCTTCCTGGTGGGGCTGGGCCGGCGGGGGAGGGGCCGCGCAGCAGCAGCGGAAACCAGACCTCGGCGATAAGAGGCTGCACAGCGACATGCAACAGTCTTTTCACTGCAGCTGAATGAGTTGTGGCGCTCACAATGCTCCCGTGACCGGGAACTGACAAGTTCAATTTTAAATCGCGGGCCTCTTGGAATCATGACTCCCACAATGCCTTGGGCACTCGCTCGGCAGTCTGGCTGCCTCTGAGGGGGAAAAAAATGTGAGAG
Seq A exon
TGTCACTCCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAAAGGGGGACTTGCTCACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCTGCTTTGATTCATTGAAA
Seq C2 exon
GGTCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTGGAGATAAATGGGCGCAATAACTTGATTCAGCAGAAGAACATGGCCATGTTGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564_MULTIEX1-2/13=C1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.121 C2=0.095
Domain overlap (PFAM):
C1:
NA
A:
PF0064219=zf-CCCH=WD(100=43.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAATCGCGGGCCTCTTGG
R:
CAGGCATCATGGCATTGGCTA
Band lengths:
247-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development