RnoEX0053018 @ rn6
Exon Skipping
Gene
ENSRNOG00000010737 | Mbnl2
Description
muscleblind-like splicing regulator 2 [Source:RGD Symbol;Acc:1591755]
Coordinates
chr15:105640097-105743709:+
Coord C1 exon
chr15:105640097-105640329
Coord A exon
chr15:105687771-105688392
Coord C2 exon
chr15:105743545-105743709
Length
622 bp
Sequences
Splice sites
3' ss Seq
CGCTAATCATTTAATTTCAGAAT
3' ss Score
5.16
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAAGGAAGGGCTGCAGCTCACAGCAACAGAGTTTAGACTGTCTTTGCTTCATCATCTGAAGGTAAAATTTTCCAGCCACGGCCGGCGGCTCGCAGAGTACAATAAACAGGGACGGAGAACTATTTGCATGGACCCCCCTTCCTCATGATGCGGTGGAGAAGCCGCGGCCACTCGGTCCTGCCAGATGTTCTTGGGGTTACTGTACAAGGGGAGGACGAGCAGAGCTAAACAAG
Seq A exon
AATTTAAAAAGGACGAAGGAAGGAGACCGCCATCCTGCTCAGATACAAAGATCTAAGAGGGTTGTTTCCCCCGCATCCTCCAAAGCTGTGAGCATCAGAACTAATATTTTCCCAAAGAGTGCCATCGTATTGAAGTCACTTTATTAAGGAGGGGGTGTATCCACAAAAACCGTCAGGAGACCAGAACCCTGGGAGCCGGAGATGACAGTGAGTACACATTGCTTGTGGCTCACAGTCTTCCAGCGGGGCCTGTGGATCGGTGACTGACTTCCTGCTTGCTGACACATTTCCCCTCCCCGGTTTCCTGGATTGAACTGCATCAAGGAATTCATTACTTACCTTCCAACTTTCATGTTGGAGTTTTCACGGCAGTAGTTTCGAGATCCTTGAGACTTGGATTGATTCCATCACTTAACACAAAGGAACCGAGCCCAAAGTAGTTCTCATCATGGCCTTGAACGTTGCCCCCGTGAGAGACACAAAGTGGCTGACGCTGGAAGTCTGCAGACAGTACCAGAGAGGAACGTGCTCACGCTCCGATGAAGAATGCAAATTCGCTCACCCCCCAAAAAGTTGCCAGGTTGAAAATGGAAGAGTAATTGCCTGCTTTGATTCCCTCAAG
Seq C2 exon
GGCCGCTGTTCAAGAGAGAACTGCAAATATCTTCATCCTCCAACACACCTAAAAACTCAGCTAGAAATCAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCGATGCTTGCCCAGCAGATGCAATTCATGTTTCCAGGAACACCGCTCCACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010737_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0064219=zf-CCCH=WD(100=43.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCTCACAGCAACAGAG
R:
GAATTGCATCTGCTGGGCAAG
Band lengths:
358-980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]