DreEX6029073 @ danRer10
Exon Skipping
Gene
ENSDARG00000052978 | mbnl1
Description
muscleblind-like splicing regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060929-704]
Coordinates
chr2:47886276-47948004:+
Coord C1 exon
chr2:47886276-47886532
Coord A exon
chr2:47899886-47900428
Coord C2 exon
chr2:47947834-47948004
Length
543 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTGTTTGTTTTAGGTG
3' ss Score
13.48
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TTCAGAGCGGTAGGACCCAGTCAGGCACCCTGGGACTGCACAGGGGCGTGTGAGAGAGAGCGTAGCTGTCTGCGAGAGGCAAACGAGAGGGGAGAGAGAGAGAGAGATGTTGACGCAGGTTTTCACTTCTGTCTGAGTGCGTCACTCTTCCGTGCAGTCATGTAAGTAAACGCCGAACACGCTCTCACTGCAGGGAGAAACATATGGATTCAGGTCCGCTCGATTTCTACGCTGAAGGGAAACATGTCAGATAACAG
Seq A exon
GTGGGTACTGAGTTTTGTGCCCTCTCTTGCGTCTGCCGCTGCTTGGACCTGCTTATAGTACCAGCCTCAGCTTTCCCGCCTGCTTGCTGCCCAAATCAGTGAACAAACTGCACCAGACCTCCTTGAACGACGCCTCAAACACAAAACAGCCAATCAGAGTCCAGGATTTTTTTTTATTGTTTTGCTTTTGGATTCCATCACTGCAGTTCACTTCAACATTTTTCTTTTTTTTTTTGTTCTTCTCGCTTTGGCCTGGTGTGCAAACCGTGGAGCTTCATGATCTAAGGCAGAGAGAGGAACGTTGGTAAAAAGTGACAAACATAAAGCACTTTTGGGATTGTAAGGATTCGAAGTCTAAAGCGTGCGGAGATGGCGATGAATATGGCTCACATGCGGGACACCAAATGGCTGACGCTGGAGGTGTGTCGAGAGTTTCAGAGGGGAACGTGCGCTAGATCTGATGCCGAGTGCAAGTTTGCGCATCCCGCCAAGAGCTGCCAGGTGGAGAACGGCCGGGTCATCGCCTGCTTTGACTCGCTGAAG
Seq C2 exon
GGCCGCTGCTCCAGAGAGAACTGCAAGTACCTTCATCCTCCTCCACACCTGAAGACGCAGCTGGAGATCAACGGCCGAAACAACCTGATCCAGCAGAAGAACATGGCCATGCTCGCACAGCAGATGCAGATCGCCAACGCCATCATGCCCGGCAGTCAGCTTCAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052978-'3-3,'3-1,6-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.083 C2=0.425
Domain overlap (PFAM):
C1:
NA
A:
PF0064219=zf-CCCH=WD(100=43.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAGCGGTAGGACCCAG
R:
TGCTGGATCAGGTTGTTTCGG
Band lengths:
352-895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]