BtaEX0021570 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018313 | MBNL2
Description
Bos taurus muscleblind-like 2 (Drosophila) (MBNL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099710]
Coordinates
chr12:78283460-78391567:+
Coord C1 exon
chr12:78283460-78283658
Coord A exon
chr12:78336155-78336932
Coord C2 exon
chr12:78391403-78391567
Length
778 bp
Sequences
Splice sites
3' ss Seq
CACTTATTTATGTTTTGCAGCTT
3' ss Score
8.2
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGACTGTCTTTGCTTCATCATCTGAAGGCAAAATTTTCCAGATACGGCAGACGGCTCCCAGAGTACAATAAGCAGGGAATGAGAACTATTTACATGGAAATTTCTTCCTCAGGATGCAGCGAAGAAACCGCGGCCGCTTGATTCTACCAGATGTTCCTGGGGTTACTGTAACGGAGAAGGAGAGACAGAGCTAAACAAG
Seq A exon
CTTCAAGATTTAAAAGTGCCTGTGTGAAGTCACTTTTGCTGGAAACCACACTCCGGGAGCTTTTTGTTCAGATCTTGTTTTTCTGTCAAATATACATTACCCTGACCTTACGAGTGGATGAAGATACCTCAACTGTCTGACTTTGCCAATTGCTTGATTTCAGAATTTTAAACGGTGGAAGGAGAAAGAAATCCTCCTAAGATCTGAACATCTCAGTGGCTTATTTTCCAGCGTCGTCAATAGCTGTGAGTGTCAGGACTAAATATTCTCCCAAGGAGTGCCATGATATTGAGGTCACTTTATTAAAAACAGTTGTGTCTGCGAAACGATCAGGAGACTTGGACGTTTACAGTCAGAGATGACACTGAGCATGCTTTTATTGCGGCCCGCAGTCTTCGAGTGGGGCATATTGATTGATGAGTGACTGCCTGCCGATAAATTTTCTCCGCGCTCTGTATCCTGGATTGGACTTCATTAAGCAATTTATCACTTACCTTCAGACTTACATGTGGGATTTTTCACAACAATAGTTTTGGAATCATTGGAACTTGGATTGATTTCACCATTTAGCAGGGAGGAACAGGATCCCAGTTATTTTCTCATCATGGCTTTGAATGTTGCCCCCGTCAGAGACACAAAATGGCTGACATTAGAGGTTTGCAGACAGTTCCAGAGAGGAACCTGCTCCCGCTCTGATGAGGAATGCAAATTCGCCCACCCCCCCAAAAGCTGCCAGGTTGAAAATGGAAGAGTAATTGCCTGCTTTGATTCCCTAAAG
Seq C2 exon
GGCCGTTGTTCAAGAGAGAACTGCAAGTATCTTCACCCTCCCACACACTTAAAAACTCAACTAGAAATTAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCCATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACCCCACTCCATCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018313-'0-10,'0-3,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.155 C2=0.286
Domain overlap (PFAM):
C1:
NA
A:
PF0064219=zf-CCCH=WD(100=43.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGTCTTTGCTTCATCATCTGA
R:
ATGGAGTGGGGTTCCTGGAAA
Band lengths:
358-1136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development