MmuEX0028101 @ mm9
Exon Skipping
Gene
ENSMUSG00000022139 | Mbnl2
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120674891-120778536:+
Coord C1 exon
chr14:120674891-120675127
Coord A exon
chr14:120724016-120724634
Coord C2 exon
chr14:120778372-120778536
Length
619 bp
Sequences
Splice sites
3' ss Seq
TGCTAATCGTTTAATTTCAGAAT
3' ss Score
5.93
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGGGAAGGAAGGGCTGCAGCTCACAGCAACAGAGTTTAGACTGTCTTTGCTTCATCATCTGAAGGTAAAATTTTCCAGCCACGGCCGGCGGCTCGCAGAGTACAATAAACAGGGACGGAGAACTATTTGCATGGACCCCCCTTCCTCATGATGCGGTGGAGAAGCCACGGCCACTCGGTCCTGCCAGATGTTCTTGGGGTTACTGTACATGGGGAAGACGAGCAGAGCTAAACAAG
Seq A exon
AATTTAAAGAGGACGAAGGAAGGAAAGCGCCATCCTGCTCAAATACAAAGATCTAAGAGGGTTGTTTTCCCACATCCTCCAAAGCTGTGAGCATTAGAACTAATATTTTCCCAAAGAGTGCCATCGTATTAAAGCCACTTTATTAAGGAGGGGTGTATCTGCAAAACAGTCAAGAGACTAGAACCCTGGGAGCCAGAGATGACAGTGAGCACGCACTGCTTGTGGCTCACAGTCTTCCAGTGGGGCCTATCGATCGGTGACTGACTTCCTGCTTGCTGACACATTCCCCCTCCCCGGTTTCCTGGATTGGACTGCATTAAAGAATTCACTGCTTACCTTCAAACTTACATGTTGGAGTTTTCACGGCGGTTGTTTTGAGATCATTGAGACTCGGATTGATTTCGACATTTAACCGAAAGGAACAGAGCCCAAAGTAGTTCTCATCATGGCCTTGAACGTTGCCCCCGTGAGAGACACAAAGTGGCTGACGCTGGAGGTCTGCAGACAGTACCAGAGAGGAACGTGCTCACGCTCCGACGAAGAATGCAAGTTTGCTCACCCCCCCAAAAGTTGCCAGGTTGAAAATGGAAGAGTAATTGCCTGCTTTGATTCCCTCAAG
Seq C2 exon
GGCCGCTGTTCAAGAGAGAACTGCAAATATCTTCATCCTCCGACACACTTAAAAACCCAGCTAGAGATTAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCGATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACGCCGCTCCATCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139-'0-4,'0-2,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.142 C2=0.714
Domain overlap (PFAM):
C1:
NA
A:
PF0064219=zf-CCCH=WD(100=43.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCTCACAGCAACAGAG
R:
AAATTGCATCTGCTGGGCAAG
Band lengths:
358-977
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: