MmuEX1020940 @ mm10
Exon Skipping
Gene
ENSMUSG00000023007 | Prpf40b
Description
pre-mRNA processing factor 40B [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99309944-99314694:+
Coord C1 exon
chr15:99309944-99310035
Coord A exon
chr15:99310659-99310846
Coord C2 exon
chr15:99314578-99314694
Length
188 bp
Sequences
Splice sites
3' ss Seq
CAGGGTCTTATGTATTCCAGGCT
3' ss Score
5.57
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GCTCTACTCCTTTGGACTTGTTCAAGTTCTATGTGGAGGAGTTGAAGGCTCGATTCCACGATGAGAAGAAGATCATAAAGGATATCCTTAAG
Seq A exon
GCTGGCCCTGAACTCCTGATCCTTCTTTCACTTCCACATGCTGGGATTATAGTGTACACCACTGTGCCTGGCTTCACATAAAATCTTCAGTGTCTCTTGCCAGTGTGGATGATGTCAGCACTGGGCTCGTTCTGCAAGGCGCACCATGGACACTGGCTGAGATGCCATTGCCCTCTTAGAGGAGGACG
Seq C2 exon
GATCGGGGCTTCTGTGTGGAGGTGAACACAGCATTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007_MULTIEX2-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000136980fB15233
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACTCCTTTGGACTTGTTCA
R:
AAGGTCAGCTTGATGTTGCCT
Band lengths:
202-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types