RnoEX0070117 @ rn6
Exon Skipping
Gene
ENSRNOG00000052539 | Prpf40b
Description
pre-mRNA processing factor 40 homolog B [Source:RGD Symbol;Acc:1565411]
Coordinates
chr7:140973972-140979197:+
Coord C1 exon
chr7:140973972-140974063
Coord A exon
chr7:140974718-140974860
Coord C2 exon
chr7:140979081-140979197
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCCACACGCTGGGATGATAGGTG
3' ss Score
2.05
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GCTCGACTCCTCTGGACTTGTTCAAGTTCTATGTGGAGGAGTTGAAGGCTCGGTTCCACGATGAGAAGAAAATCATAAAGGATATTCTTAAG
Seq A exon
GTGTGCACCACTATGCCTGGCTTCACGTAAATTCTGGATCTTCAGTGTCTCTTGCCAGTTTGGATGATGTCAGCACTGGGCTCGTTCTGCAAGGCATGCCATGGACACTGGCTGAGATGACACTGCCCTCTTAGAGGAAGAGG
Seq C2 exon
GACCGGGGCTTCTGTGTGGAGGTGAACACAGCCTTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052539_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000091306fB11422
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGACTCCTCTGGACTTGT
R:
AAGGTCAGCTTGATGTTGCCT
Band lengths:
202-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]