MmuEX1024209 @ mm10
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35121224-35177854:+
Coord C1 exon
chr11:35121224-35121711
Coord A exon
chr11:35171573-35171644
Coord C2 exon
chr11:35177783-35177854
Length
72 bp
Sequences
Splice sites
3' ss Seq
GAATTTTCTTTCCACTGCAGTGA
3' ss Score
7.28
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
CCCAGACAGAGCCCTCACCTCTACCGGCGACCCAGAGGGACCCGAGGGCGCTCGGTACCTGGGCACCGTGAGTGATGCGCAGCGGGGCAGCGCCAGCCCCACGGATGGAGCTGCTGCCGCCGCCGCCCGGCGCGCCCCGCTCCGCCCGCACCCCGTGCGCCTGAGCGCCGCGCCCGCCCCTCCTCCGCGCTAACTCCGCCGCCCGCCCCCCAGGCCGCCCGCGCGCCTCCTCGGGCTCCTCGTGTCCCGCCTCGCCAGGCATCCTCCTCTGGGTGCGGGCGCTTGTGCACCATGGCCCTCGGCCGGACCGGGGCCGGCGCCGCTGTGCGCGCCCGCCTGGCGCTGGGCTTGGCGCTTGCGAGCATCCTGAGCGGACCCCCTGCTGCCGCCTGCCCCACCAAGTGTACCTGCTCCGCCGCTAGCGTGGACTGCCACGGGCTGGGCCTGCGCGCCGTTCCTCGGGGCATCCCCCGCAACGCAGAGCGCCT
Seq A exon
TGACCTGGACAGAAATAACATCACCAGGATCACCAAAATGGACTTCGCTGGCCTGAAGAATCTTCGAGTCTT
Seq C2 exon
GCATCTGGAAGACAATCAAGTCAGCATCATCGAGAGAGGCGCCTTCCAGGATCTGAAGCAGCTGGAGAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'0-2,'0-0,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=42.4),PF127992=LRR_4=PU(4.5=3.0)
A:
PF127992=LRR_4=FE(54.5=100)
C2:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCCACCAAGTGTACCT
R:
TCTCCAGCTGCTTCAGATCCT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types