GgaEX1053914 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3574865-3630103:+
Coord C1 exon
chr13:3574865-3575112
Coord A exon
chr13:3601814-3601885
Coord C2 exon
chr13:3630032-3630103
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTTCTCTTACAGTGA
3' ss Score
11.6
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GCATTTCATCTTGAAGGGCTGGCTGCTCTCACACACTTTTATATCCGCTGGAGTGATCGAGAAATCATGTCTGGTGGAAGAAGTGAGTTTCTGTGCCTTGGAATGATCTTGGGCTTTTGGAGCTCCGTGAGTTGGATGCCTGTTGGAGGCTGCCCGCATAAATGTACGTGCATTGCTTCCAACGTGGATTGTCATGGACTAGGACTCAAAACTGTACCGAGGGATATTCCCAGGAATGCTGAGAGACT
Seq A exon
TGATCTGGAAAAAAATAACATAACGAGAATCACAAAGATGGACTTCTCGGGACTGAAGAATCTCCGTGTCTT
Seq C2 exon
GCGTCTGAACAAGAACAAATTGCAAGTTCTTCCAGAGCTCCTTTTTCAGAACACGCAGAAGTTAACCAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916_MULTIEX1-3/7=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=45.9),PF138551=LRR_8=PU(8.2=8.2)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=PD(11.5=28.0)
Main Skipping Isoform:
ENSGALT00000002967fB12156
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGAGCTCCGTGAGTTGG
R:
GGAGCTCTGGAAGAACTTGCA
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]