BtaEX6030655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41236589-41240717:+
Coord C1 exon
chr6:41236589-41236767
Coord A exon
chr6:41239442-41239513
Coord C2 exon
chr6:41240646-41240717
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTACTTGTTTTCTCTTAGGGA
3' ss Score
10.2
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGCACGGCGTCGGCTGGCAGACGCTGTCCCTGTCTCTGGGGTTAGTGCTGGCGATCCTGAACGAGGTGGCGCCGCAAGCGTGTCCGGCGCAGTGCTCCTGCTCCGGGAGCACAGTGGACTGTCACGGGCTGGCGTTGCGCAGTGTGCCCAGGAATATCCCCCGCAACACCGAGAGATT
Seq A exon
GGATTTGAATGGAAATAACATCACAAGGATTACCAAGACAGATTTTGCTGGTCTTCGACACCTAAGAGTTCT
Seq C2 exon
TCAGCTTATGGAGAATAAGATTACCACCATTGAAAGAGGAGCATTCCAGGATCTTAAAGAACTGGAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108-'0-1,'0-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=46.7),PF138551=LRR_8=PU(8.2=8.3)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTGCTGGCGATCCTGAAC
R:
TGCTCCTCTTTCAATGGTGGT
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]