GgaEX6035832 @ galGal3
Exon Skipping
Gene
ENSGALG00000014419 | Q90XG3_CHICK
Description
NA
Coordinates
chr4:77971644-77974568:-
Coord C1 exon
chr4:77974402-77974568
Coord A exon
chr4:77972835-77972906
Coord C2 exon
chr4:77971644-77971715
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTATGAATTATTCTCCTCAGGGA
3' ss Score
7.87
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCCTGGGGGAGGCTCCCCCTGGCCCTGGGGCTGCTGCTGGTGCTGGCGGGCGAGGCGGCGCCGCAGCCGTGCCCGGCGCAGTGCTCCTGCTCAGGAAGCACGGTGGACTGTCACGGGCTGGCGCTGCGCGGCGTCCCGAGGAACATCCCCCGCAACACCGAGCGGCT
Seq A exon
GGACCTTAATGGAAATAACATCACCAGAATCACCAAGACCGACTTTGCTGGTCTAAGGCACCTTCGAGTTCT
Seq C2 exon
TCAGCTCATGGAGAACAAGATTAGCACTATTGAGAGAGGAGCATTCCAGGATTTAAAAGAACTGGAGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=47.5),PF138551=LRR_8=PU(11.1=8.5)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACGGTGGACTGTCAC
R:
AGCCTCTCCAGTTCTTTTAAATCCT
Band lengths:
145-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]