DreEX0073444 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23092610-23097761:+
Coord C1 exon
chr1:23092610-23094323
Coord A exon
chr1:23095275-23095346
Coord C2 exon
chr1:23097690-23097761
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTTTTTTTCTACAGGGA
3' ss Score
11.99
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAGCCACAAAACAAAAGCGCAGAGCGACAATGCGCGTGCGGGATTAGTTTAAACTTTGGTTTGCTGCGGAATCGTCGGGATTTGGACTCTAAACTCGCGTCGCTGTACAGAAGAGACTACGTAGATCTCAGATGGGAGCGGATCTGGATTGAATTGCAGTTTATTTCCCTTAAAGAAGAAGGGGACATTCCAGCCGGAGGAGATTACAAGTGTTTCCTTTGCAAAGATTATTTGTTCTGACTCCTCTTCTTTTTGGATTTAAAAGTCCTGCGCCTGCTCTGGTGCAGTTGTCGCGCAGGAGGGATTCTGTGTGTTTTATCAGAACTTGAGGAAACAGCGGTGATGTTTGTGTTGAAATCAGTGGTGCTCTGTGCGTTGCTCTGCGGGGCTGGAGCCCAGTCGTGCCCGTCCCAGTGCTCCTGCAGCGGGACAGCGGTGGACTGCCACGGCCAGAGTCTGCGGAGCGTGCCGCGGAACATTCCCCGCAACGTTGAGCGACT
Seq A exon
GGACCTGAATGCAAACAATCTGACTAAAATCACTAAGGCAGATTTTGCGGGACTGAAGAACCTTCGAGTTCT
Seq C2 exon
GCAGTTAATGGAGAACAAGATCAGTTCAATTGAAAGAGGGGCATTTCAGGATCTACAAGAGCTGGAAAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=52.8),PF138551=LRR_8=PU(8.8=9.4)
A:
PF138551=LRR_8=FE(42.1=100)
C2:
PF138551=LRR_8=FE(42.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTGTGCGTTGCTCT
R:
TGCCCCTCTTTCAATTGAACTGA
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]