HsaEX6083774 @ hg38
Exon Skipping
Gene
ENSG00000145147 | SLIT2
Description
slit guidance ligand 2 [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr4:20253260-20257939:+
Coord C1 exon
chr4:20253260-20253994
Coord A exon
chr4:20256672-20256743
Coord C2 exon
chr4:20257868-20257939
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGGTTTTTCTCTTAGGGA
3' ss Score
10.58
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CCTTGGGAGACAGAAGACGCGTGATCTCCTCTCCGCTGCTCTTGGGGTCTCCTTGCAGCCCTGGCCAGGCGGATTCATCCTCAGGACCTAAAGTTGCCCAAGGAGCTCCTGCTCTGCCAGAGGAGGGTGGAGAGGGCGGTGGGAGGCGTGTGCCTGAGTGGGCTCTACTGCCTTGTTCCATATTATTTGGTGCACATTTTCCCTGGCACTCTGGGTTGCTAGCCCCGCCGGGCACTGGGCCTCAGACACTGCGCGGTTCCCTCGGAGCAGCAAGCTAAAGAAAGCCCCCAGTGCCGGCGAGGAAGGAGGCGGCGGGGAAAGATGCGCGGCGTTGGCTGGCAGATGCTGTCCCTGTCGCTGGGGTTAGTGCTGGCGATCCTGAACAAGGTGGCACCGCAGGCGTGCCCGGCGCAGTGCTCTTGCTCGGGCAGCACAGTGGACTGTCACGGGCTGGCGCTGCGCAGCGTGCCCAGGAATATCCCCCGCAACACCGAGAGACT
Seq A exon
GGATTTAAATGGAAATAACATCACAAGAATTACGAAGACAGATTTTGCTGGTCTTAGACATCTAAGAGTTCT
Seq C2 exon
TCAGCTTATGGAGAATAAGATTAGCACCATTGAAAGAGGAGCATTCCAGGATCTTAAAGAACTAGAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=46.7),PF138551=LRR_8=PU(8.2=8.3)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=PU(33.3=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGCTGGCGATCCTGAACA
R:
TGCTCCTCTTTCAATGGTGCT
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains