RnoEX0083451 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:67165678-67170361:-
Coord C1 exon
chr14:67169664-67170361
Coord A exon
chr14:67166924-67166995
Coord C2 exon
chr14:67165678-67165749
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTGGTGTCTCTTAGGGA
3' ss Score
9.8
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTTTTACCACCAAGTTGAAGTCGCGCTCTGTCCTCACAGCTGCTTCGGGGTCTACCCCAAGCCTGAGTCGGGCCTATTGATATTCAGGACCTGAAGTTGCCCACGGATCTTGTGCTCTGCTAGAAAGGCTTGGAGAGCGGAGGAAAGACGTGTGCTTCTGTCTGCTCTCCTGCCCCATATCACTGTTCCATATTACTGTGTGAGCATCTCTCCGGGTGCTGTGGGCTGCAAGACCAGCGCCAGGAACTGGGCCTCGGACACCGTCCACTTTTCACGCAACCGAAAGCTAAAGTCCCTCAAAGCAAGGGGTCTGTTGGGAAGATGAGTGGCATTGGCTGGCAGACACTGTCCCTATCTCTGGCGTTAGTGTTGTCGATCTTGAACCAGGTGGCGCCTCAGGCGTGCCCGGCCCAGTGCTCCTGTTCAGGCAGCACAGTGGACTGTCATGGGCTGGCACTGCGCAGTGTGCCCAGGAATATCCCCCGCAACACGGAGAGACT
Seq A exon
GGATTTGAATGGAAATAACATCACAAGGATCACGAAGACAGATTTTGCGGGTCTCAGACACCTCAGAGTTCT
Seq C2 exon
TCAGCTCATGGAGAACAAGATCAGCACCATCGAGAGGGGAGCATTCCAGGATCTTAAGGAGCTAGAAAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=46.7),PF138551=LRR_8=PU(8.2=8.3)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGATCTTGAACCAGGTGGC
R:
ATCCTGGAATGCTCCCCTCTC
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]