MmuEX0043684 @ mm9
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48374394-48380430:+
Coord C1 exon
chr5:48374394-48376457
Coord A exon
chr5:48379078-48379149
Coord C2 exon
chr5:48380359-48380430
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGGTGTCTCTTAGGGA
3' ss Score
10.57
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CCGCCAAGTTGAAGTCGCGCACTGTCCTCACAGCTGCTCCGGGGTCTACTCCCAGCCTGAGTCGGGCCTATTGATATTCAGAACTTGAAGTTGCCCACGGATCTTCTGCTCTGCTAGAAAGGCTTGAAGAGCAGAGGAAAGACCTGTGCTTCTGTCAGCTCTCCTGCCCCATATCACTGTTCCAGATTACTGTGTGAGCATCTCCCCGGGTGCTGTGGGCTGCAAGCCCAGCGCCAGGCACTGGGCCTCGGACACTGCCCGGTTTTTACACAACCGAAAGCTCAAGAGAAGTCCTTCAAAGCAAGGAGTCTATTAGGGAAGATGAGTGGCATTGGCTGGCAGACACTGTCCCTATCGCTGGGGTTAGTGTTGTCGATCTTGAACAAGGTGGCGCCGCAGGCGTGCCCGGCCCAGTGCTCCTGTTCAGGCAGCACGGTGGACTGTCATGGGCTGGCACTGCGCAGTGTGCCCAGGAATATCCCCCGCAACACCGAGAGACT
Seq A exon
GGATTTGAATGGAAATAACATCACGAGGATCACGAAGATAGATTTTGCTGGTCTCAGGCACCTCAGAGTTCT
Seq C2 exon
TCAGCTCATGGAGAACAGAATCAGCACCATCGAGAGGGGAGCATTCCAGGATCTTAAGGAGCTGGAAAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=46.7),PF138551=LRR_8=PU(8.2=8.3)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATCTTGAACAAGGTGGCG
R:
ATCCTGGAATGCTCCCCTCTC
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: