GgaEX6035832 @ galGal4
Exon Skipping
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74799766-74802699:-
Coord C1 exon
chr4:74802524-74802699
Coord A exon
chr4:74800957-74801028
Coord C2 exon
chr4:74799766-74799837
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTATGAATTATTCTCCTCAGGGA
3' ss Score
7.87
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGATGTGCGCCTGGGGGAGGCTCCCCCTGGCCCTGGGGCTGCTGCTGGTGCTGGCGGGCGAGGCGGCGCCGCAGCCGTGCCCGGCGCAGTGCTCCTGCTCAGGAAGCACGGTGGACTGTCACGGGCTGGCGCTGCGCGGCGTCCCGAGGAACATCCCCCGCAACACTGAGCGGCT
Seq A exon
GGACCTTAATGGAAATAACATCACCAGAATCACCAAGACCGACTTTGCTGGTCTAAGGCACCTTCGAGTTCT
Seq C2 exon
TCAGCTCATGGAGAACAAGATTAGCACTATTGAGAGAGGAGCATTCCAGGATTTAAAAGAACTGGAGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=47.5),PF138551=LRR_8=PU(8.2=8.5)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGCGCCTGGGGGAG
R:
GCTAATCTTGTTCTCCATGAGCTGA
Band lengths:
199-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]