DreEX0073474 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24443328-24463887:-
Coord C1 exon
chr14:24463290-24463887
Coord A exon
chr14:24449502-24449573
Coord C2 exon
chr14:24443328-24443399
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTTTCTCTTTCCAGGGA
3' ss Score
13.46
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
Exon sequences
Seq C1 exon
CGTGTTTCTAACTTTTGATGCGCATTTACAGTGGTGTGGACAAACATATGCAACTTCACGTTTGAATGGACAAAGCTTTTTACCGATGAAGTTTTTTAAAACTGGAACTACTTTATGCCGCTGTCGTAGTTCATCGTTAAGTTTTCCCAACTTGTCCTACCTGTAGTGTTATTTCGCGCGCGGAACTTTATTGGCTGTGAACAAGACACGGAGACTTTTTTGTTAGCCTTTGGAATTTTTGTTTTATAAATAGTCCGCAACACTTTTGTTTTATAGCATTTTGAATATTTCTAGTATCGTTATTGGGCTGCTATCAGCCTCAGAGGATATATGATGCGGTGGGTAAAGTATTGGGGGACAGTGGCTGTGCTCTGCGGGCTGCTGAGCTGTGCTGTGAATGGATGCCCGCATAAGTGCAGTTGTTCGGGCTCTCATGTGGATTGTCAGGGTCAAGCCTTCAAGACGGTGCCTAGGGGAATCCCGAGGAATGCCGAGAGACT
Seq A exon
GGATCTGGACAGGAATAACATCACCCGGATCACCAAAGTGGACTTCTCTGGCCTCAAGAACCTGCGCGTGCT
Seq C2 exon
ACATCTAGAGAACAATCAAATAAGTGTGATTGAAAGAGGAGCATTTGAGGGTCTCAAACAACTTGAGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=49.1),PF138551=LRR_8=PU(8.3=8.8)
A:
PF133061=LRR_5=PU(11.9=64.0)
C2:
PF138551=LRR_8=FE(40.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGAGCTGTGCTGTGAAT
R:
TGAGACCCTCAAATGCTCCTCT
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]