MmuEX6000638 @ mm9
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:24867946-24929048:+
Coord C1 exon
chr18:24867946-24868274
Coord A exon
chr18:24912720-24912826
Coord C2 exon
chr18:24928984-24929048
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTCTTTCTCTCCCAGCTC
3' ss Score
10.33
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
CCGTGGCCGGAGTCCGGGCTGCAGCCGGGCGCGCCGTTGCCTGCGAGCCCGCGAGCCTGCTAGCGGCGGCAGTGGCGGCAGCTTCTCCTCCGCACAGACCCGGAGCCCCGGCCTGCGCGGCCCGCTGACCCTGGGGCCCGCGCCCCACGGGGCAGGGATGCATCATGGCCACGCTGGCTTGTCGCGTGCAGTTCTTGGACGACACCGATCCTTTCAACAGCACCAACTTCCCAGAGCCAAGCCGGCCACCGCTGTTCACATTCCGCGAGGACCTGGCTCTGGGCACCCAGTTGGCCGGGGTCCATCGGCTGCTGCGGGCGCCGCACAAG
Seq A exon
CTCGATGACTGTACCCTGCAGCTGTCCCACAATGGCGCCTACCTGGATCTGGAGGCCACGCTGGCGGAACAGCGGGATGAGCTAGAAGGCTTCCAGGATGACACAGG
Seq C2 exon
GCGGGGCAAGAAGAACAGCATTATTCTGAGGACACAGCTGTCTGTGAGGGTCCATGCCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063718=Drf_GBD=PU(3.8=13.9)
C2:
PF063718=Drf_GBD=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGATGCATCATGGCCAC
R:
CAATGCAGGCATGGACCCTC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: