GgaEX0019783 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83099159-83143453:+
Coord C1 exon
chr2:83099159-83099259
Coord A exon
chr2:83129303-83129409
Coord C2 exon
chr2:83143389-83143453
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATCTGAAATTTGTTTTACAGCTT
3' ss Score
8.1
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCGCCCCGCAGAAG
Seq A exon
CTTGATGACTGCACTCTGCAATTGTCTCACAATGGTACCTATCTGGACTTAGAATCTACTCTAGCAGAACAAAGAGATGAATTGGAGGGCTTCCAGGAAGATGCTGG
Seq C2 exon
GAGGGGCAAGAAGCACAGTATAATTTTGAGGACCCAGCTGTCAGTGAGAGTCCATGCCTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'0-1,'0-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF063718=Drf_GBD=PU(7.2=27.8)
C2:
PF063718=Drf_GBD=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]